(log file starts at Tue May 30 04:01:01 UTC 2023)

[harvester info] --> Processing flat (https://github.com/proycon/flat) [Tue May 30 04:01:01 UTC 2023]

[harvester info] Git updating cached clone of https://github.com/proycon/flat...

[harvester info] Found release v0.11

[harvester info] Using 'v0.11'

[harvester info] Git reference: v0.11

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/flat for harvestable resources...

[harvester info] found python setup for flat, converting to codemeta

-- begin log --

No input files specified, but found python project (setup.py) in current dir, using that...

Generating egg_info

running egg_info

writing FoLiA_Linguistic_Annotation_Tool.egg-info/PKG-INFO

writing dependency_links to FoLiA_Linguistic_Annotation_Tool.egg-info/dependency_links.txt

writing requirements to FoLiA_Linguistic_Annotation_Tool.egg-info/requires.txt

writing top-level names to FoLiA_Linguistic_Annotation_Tool.egg-info/top_level.txt

reading manifest file 'FoLiA_Linguistic_Annotation_Tool.egg-info/SOURCES.txt'

reading manifest template 'MANIFEST.in'

adding license file 'LICENSE'

writing manifest file 'FoLiA_Linguistic_Annotation_Tool.egg-info/SOURCES.txt'

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://webservices.cls.ru.nl/portal/folia-linguistic-annotation-tool

Processing source #1 of 1

Obtaining python package metadata for: FoLiA_Linguistic_Annotation_Tool

Loading metadata from FoLiA_Linguistic_Annotation_Tool via importlib.metadata

WARNING: No translation for distutils or pyproject.toml key Metadata-Version

WARNING: No translation for distutils or pyproject.toml key Requires-Python

WARNING: No translation for distutils or pyproject.toml key License-File

WARNING: No translation for distutils or pyproject.toml key Description

Found dependency folia >= 2.5.7

Found dependency Django >= 3.0

Found dependency requests 

Found dependency foliadocserve >= 0.7.7

Found dependency mozilla-django-oidc 

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 70 new triples, total is now 71

Remapping URI to (possibly) new identifier and version component: https://webservices.cls.ru.nl/portal/folia-linguistic-annotation-tool -> https://webservices.cls.ru.nl/portal/folia-linguistic-annotation-tool/0.11

[CODEMETA VALIDATION (folia-linguistic-annotation-tool)] done

-- end log --

[harvester info] Looking for license....

[harvester info] Found license GPL-3.0-only

-- begin log --

Trying README.rst ...

Trying LICENSE ...

-- end log --

[harvester info] Getting contributors from git...

-- begin log --

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://webservices.cls.ru.nl/portal/flat-contributors

Processing source #1 of 1

Extracting contributors from /tmp/codemeta-harvester.cache//tmp/flat.CONTRIBUTORS

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat-contributors)] processed 31 new triples, total is now 32

Remapping URI to (possibly) new identifier and version component: https://webservices.cls.ru.nl/portal/flat-contributors -> https://webservices.cls.ru.nl/portal/flat.contributors/snapshot

[CODEMETA VALIDATION (https://webservices.cls.ru.nl/portal/flat.contributors/snapshot)] codeRepository not set

[CODEMETA VALIDATION (https://webservices.cls.ru.nl/portal/flat.contributors/snapshot)] author not set

[CODEMETA VALIDATION (https://webservices.cls.ru.nl/portal/flat.contributors/snapshot)] license not set

[CODEMETA VALIDATION (https://webservices.cls.ru.nl/portal/flat.contributors/snapshot)] done

-- end log --

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2014-01-02T14:39:13Z+0100, date modified: 2022-05-20T15:33:09Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/proycon/flat)

-- begin log --

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://webservices.cls.ru.nl/portal/flat

Processing source #1 of 1

Querying GitAPI parser for https://github.com/proycon/flat

    Parsing Github API response

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 28 new triples, total is now 29

Remapping URI to (possibly) new identifier and version component: https://webservices.cls.ru.nl/portal/flat -> https://webservices.cls.ru.nl/portal/flat/snapshot

[CODEMETA VALIDATION (https://webservices.cls.ru.nl/portal/flat/snapshot)] done

Querying https://api.github.com/repos/proycon/flat

Remaining github API requests: 4993 ### Next rate limit reset at: 2023-05-30 05:00:09 (has_token=True)

Querying https://api.github.com/users/proycon

Remaining github API requests: 4992 ### Next rate limit reset at: 2023-05-30 05:00:09 (has_token=True)

-- end log --

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Found DOI https://doi.org/10.5281/zenodo.6567192

[harvester info] Converting README.rst to README.md

[harvester info] Looking for TRL information in README.md...

-- begin log --

-- end log --

[harvester info] Looking for repostatus information in README.md...

[harvester info] Found repostatus https://www.repostatus.org/#active

-- begin log --

-- end log --

[harvester info] Looking for continuous integration information in README.md...

-- begin log --

-- end log --

[harvester info] Looking for documentation links in README.md...

[harvester info] Scraping title from http://flat.readthedocs.io/en/latest/?badge=latest

[harvester info] Found documentation at http://flat.readthedocs.io/en/latest/?badge=latest : "name": "FLAT - FoLiA Linguistic Annotation Tool - Documentation — FLAT v0.5.2 documentation",

[harvester info] Scraping title from http://flat.readthedocs.io/en/latest/administration_guide.html

[harvester info] Found documentation at http://flat.readthedocs.io/en/latest/administration_guide.html : "name": "FLAT Administration Guide — FLAT v0.5.2 documentation",

[harvester info] Scraping title from http://flat.readthedocs.io/en/latest/installation_guide.html

[harvester info] Found documentation at http://flat.readthedocs.io/en/latest/installation_guide.html : "name": "FLAT Installation Guide — FLAT v0.5.2 documentation",

[harvester info] Scraping title from http://flat.readthedocs.io/en/latest/user_guide.html

[harvester info] Found documentation at http://flat.readthedocs.io/en/latest/user_guide.html : "name": "FLAT User Guide — FLAT v0.5.2 documentation",

-- begin log --

-- end log --

[harvester info] Falling back to git tag (v0.11) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Looking for repostatus information in README.rst in master branch...

[harvester info] Found repostatus (master branch) https://www.repostatus.org/#active

-- begin log --

-- end log --

[harvester info] Found README.rst

[harvester info] Reconciliating: codemetapy  --baseuri https://webservices.cls.ru.nl/portal --baseuri https://webservices.cls.ru.nl/portal --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "flat" --codeRepository "https://github.com/proycon/flat" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-doi.flat.codemeta.json 

-- begin log --

Passed 13 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-doi.flat.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://webservices.cls.ru.nl/portal/flat

Processing source #1 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 1 new triples, total is now 2

Processing source #2 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 1 new triples, total is now 3

Processing source #3 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 16 new triples, total is now 19

Processing source #4 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 2 new triples, total is now 21

Processing source #5 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 1 new triples, total is now 22

Processing source #6 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.flat.codemeta.json

    Found main resource with URI https://webservices.cls.ru.nl/portal/flat/snapshot

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 32 new triples, total is now 53

Processing source #7 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] overriding old http://schema.org/dateCreated (2014-01-02T13:38:48Z -> 2014-01-02T14:39:13Z+0100)

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] overriding old http://schema.org/dateModified (2023-02-21T12:36:57Z -> 2022-05-20T15:33:09Z+0200)

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 2 new triples, total is now 53

Processing source #8 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.flat.codemeta.json

    Found main resource with URI https://webservices.cls.ru.nl/portal/flat.contributors/snapshot

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 32 new triples, total is now 80

Processing source #9 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only)

[CODEMETA CORRECTION (https://webservices.cls.ru.nl/portal/flat)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://webservices.cls.ru.nl/portal/flat)] processed 1 new triples, total is now 80

Processing source #10 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.flat.codemeta.json

    Found main resource with URI https://webservices.cls.ru.nl/portal/folia-linguistic-annotation-tool/0.11

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/author (https://webservices.cls.ru.nl/portal/stub/H-5648356e5975d0f1 -> https://webservices.cls.ru.nl/portal/stub/H-6d3ec1e69dcf9813)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/description (FoLiA Linguistic Annotation Tool -- Flat is a web-based linguistic annotation environment based around the FoLiA format (http://proycon.github.io/folia), a rich XML-based format for linguistic annotation. Flat allows users to view annotated FoLiA documents and enrich these documents with new annotations, a wide variety of linguistic annotation types is supported through the FoLiA paradigm. -> FLAT is a web-based linguistic annotation environment based around the FoLiA format (https://proycon.github.io/folia), a rich XML-based format for linguistic annotation. Flat allows users to view annotated FoLiA documents and enrich these documents with new annotations, a wide variety of linguistic annotation types is supported through the FoLiA paradigm.)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (clariah -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (clarin -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (javascript -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (python -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (annotation-tool -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (linguistic-annotation-framework -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (computational-linguistics -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (web-application -> annotation)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/name (flat -> FoLiA-Linguistic-Annotation-Tool)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/version (v0.11 -> 0.11)

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 83 new triples, total is now 139

Processing source #11 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 1 new triples, total is now 139

Processing source #12 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 1 new triples, total is now 139

Processing source #13 of 13

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-doi.flat.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/identifier (folia-linguistic-annotation-tool -> )

[CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 5 new triples, total is now 143

Remapping URI to (possibly) new identifier and version component: https://webservices.cls.ru.nl/portal/flat -> https://webservices.cls.ru.nl/portal/flat/0.11

[CODEMETA VALIDATION (flat)] done

[CODEMETA ENRICHMENT (flat)] Guessing interface type https://w3id.org/software-types#WebApplication based on clues

[CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (flat)] adding affiliation(s) of first author as producer

VALIDATION https://webservices.cls.ru.nl/portal/flat/0.11 #1: Warning: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://webservices.cls.ru.nl/portal/flat/0.11 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://webservices.cls.ru.nl/portal/flat/0.11 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://webservices.cls.ru.nl/portal/flat/0.11 #4: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

VALIDATION https://webservices.cls.ru.nl/portal/flat/0.11 #5: Info: A research domain *SHOULD* be expressed as a category using the NWO Research Fields vocabulary, if applicable (This is missing in the metadata)

VALIDATION https://webservices.cls.ru.nl/portal/flat/0.11 #6: Info: A research activity *SHOULD* be expressed as a category using the TaDiRaH vocabulary (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/flat.codemeta.json

[harvester info] Harvesting remote service URL https://webservices.cls.ru.nl/flat/ for flat: codemetapy  --baseuri https://webservices.cls.ru.nl/portal --baseuri https://webservices.cls.ru.nl/portal --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl -O "/tmp/codemeta-harvester.cache//tmp/flat.codemeta.json" "/tmp/out/flat.codemeta.json" "https://webservices.cls.ru.nl/flat/"

-- begin log --

Passed 2 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/out/flat.codemeta.json', 'json'), ('https://webservices.cls.ru.nl/flat/', 'web')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://webservices.cls.ru.nl/portal/flat

Processing source #1 of 2

Parsing json-ld file from /tmp/out/flat.codemeta.json

    Found main resource with URI https://webservices.cls.ru.nl/portal/flat/0.11

    Injected (possibly temporary) URI https://webservices.cls.ru.nl/portal/flat

[CODEMETA COMPOSITION (flat)] processed 154 new triples, total is now 154

Processing source #2 of 2

Fallback: Obtaining metadata from remote URL https://webservices.cls.ru.nl/flat/

    Service replied with content-type text/html

    Parsing html...

    Parsing site metadata

Adding service (targetProduct) https://webservices.cls.ru.nl/flat/

[CODEMETA COMPOSITION (flat)] processed 9 new triples, total is now 161

Remapping URI to (possibly) new identifier and version component: https://webservices.cls.ru.nl/portal/flat -> https://webservices.cls.ru.nl/portal/flat/0.11

[CODEMETA VALIDATION (flat)] done

-- end log --

[harvester info] <-- Finished processing flat (https://github.com/proycon/flat) [Tue May 30 04:01:24 UTC 2023]